SetariaDB-Download

Yugu1-T2T Genome v1.0

Genome fasta [DOWNLOAD] (gz file, 111 MB, MD5)
GFF file [DOWNLOAD] (gz file, 5.3 MB, GFF3 file for Yugu1-T2T genome (v1.0). MD5)
CDS sequence [DOWNLOAD] (gz file, 15 MB, MD5)
Protein sequence [DOWNLOAD] (gz file, 9.0 MB, MD5)
Gene sequence [DOWNLOAD] (gz file, 37 MB, MD5)
Annotation [DOWNLOAD] (gz file, 4.3 MB, Funtional annotations of Yugu1-T2T based genes. MD5)
Repeat information [DOWNLOAD] (tar.gz file, GFF format. MD5)
ID-converter [DOWNLOAD] (gz file, Table of Yugu1-T2T and Yugu1-v2.2 gene IDs. MD5)

110 Setaria Genomes Used for Pan-genome Studies

Sample ID	Sample Name	Origin	Type	Longitude	Latitude	Genome Sequence	CDS Sequence	Protein Sequence	Gene Sequence	GFF3	Annotation
C01	Liushiri	Japan	cultivar	139.068	36.491	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C02	Chigu4	China	cultivar	111.6633	40.82094	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C03	8311	China	cultivar	114.878	40.779	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C04	Chigu5	China	cultivar	111.6633	40.82094	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C05	Chigu8	China	cultivar	111.6633	40.82094	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C06	Jigu19	China	cultivar	114.48978	38.04513	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C07	Jigu29	China	cultivar	114.48978	38.04513	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C08	Yugu11	China	cultivar	114.35005	36.09685	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C09	Yugu2	China	cultivar	114.35005	36.09685	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C10	Lugu7	China	cultivar	117.0056	36.66707	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C12	Lugu10	China	cultivar	117.0056	36.66707	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C13	Jigu12	China	cultivar	117.0056	36.66707	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C14	Gongai2	China	cultivar	125.31543	43.89256	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C15	Jigu25	China	cultivar	114.48978	38.04513	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C16	Chenggu11	China	cultivar	117.92234	40.9676	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C17	Gonggu60	China	cultivar	125.31543	43.89256	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C18	Gonggu63	China	cultivar	125.31543	43.89256	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C19	Longgu31	China	cultivar	128.69623	46.58711	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C20	Longgu32	China	cultivar	128.69623	46.58711	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C21	Longgu25	China	cultivar	128.69623	46.58711	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C22	Changnong35	China	cultivar	113.10557	36.18191	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C23	Changsheng07	China	cultivar	113.10557	36.18191	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C24	Jingu21	China	cultivar	111.77903	37.2634	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C25	Jingu40	China	cultivar	111.77903	37.2634	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C26	Mengfenggu11	China	cultivar	113.235	23.192	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C27	Jingu29	China	cultivar	111.77903	37.2634	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C28	Ai88	China	cultivar	114.48978	38.04513	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C29	Zhaogu1	China	cultivar	111.6633	40.82094	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C31	Chigu7	China	cultivar	111.6633	40.82094	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C32	Gonggu6	China	cultivar	125.31543	43.89256	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C33	Bagu1	China	cultivar	114.878	40.779	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C34	Zhonggu2	China	cultivar	116.334	39.968	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C35	Jigu39	China	cultivar	114.48978	38.04513	FASTA	FASTA	FASTA	FASTA	GFF	TXT
C36	Yugu19	China	cultivar	114.35005	36.09685	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Ci846	Ci846	Bulgaria	landrace	25.231	42.761	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L01	Paoziyanguzi-1	China	landrace	127.501	50.2523	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L02	00000011	China	landrace	127.346	49.432	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L03	Dazaopi	China	landrace	125.22607	49.17844	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L04	Beihuangsihao	Russia	landrace	37.617	55.746	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L05	Xiaomiaojin	China	landrace	122.83958	45.61642	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L06	Heiniangu	China	landrace	123.34136	42.74518	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L07	Damaomaogu	China	landrace	118.94982	42.26798	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L08	Wanmaozhuanian	China	landrace	121.6488	42.00795	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L09	Xiaoqinggu	China	landrace	105.05614	35.6942	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L10	Yatache	China	landrace	113.59396	40.03901	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L11	00004937	China	landrace	112.569	37.880	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L12	Maotigu	China	landrace	113.19962	36.1135	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L13	Huangdali	China	landrace	115.152	40.267	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L14	Maomaoliang	China	landrace	118.15677	40.75837	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L15	Qianchuanjingu	China	landrace	116.38094	39.92361	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L16	Liushabai	China	landrace	112.43572	34.8283	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L17	liushitianhuangtang	China	landrace	115.70152	36.84621	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L18	Huangtoubang	China	landrace	110.39633	28.45548	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L19	Qitouhuang	China	landrace	117.18768	34.26963	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L20	Longzhuanian	China	landrace	125.08456	45.52032	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L21	Jinxiangyu	China	landrace	118.956806	42.275317	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L22	Oulihong	China	landrace	119.33505	41.59338	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L23	Xiaohonggu	China	landrace	102.89154	37.46508	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L24	00018751	China	landrace	106.245	36.018	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L25	Xiaohonggu	China	landrace	102.262329	36.098322	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L26	60tianhuanjia	China	landrace	122.841114	45.619026	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L27	Dongshangu	China	landrace	114.55316	38.43654	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L28	Xiaohuanggu	China	landrace	107.59183	37.59266	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L29	Liushizao	China	landrace	108.93194	34.61556	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L30	Hongjiugu	China	landrace	107.81314	34.68395	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L31	Xiaomi	China	landrace	107.10468	29.16835	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L32	Xiaomi	China	landrace	105.284	27.30808	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L33	Gouweisu(xiaosu)	China	landrace	109.5755	19.51849	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L34	Baigu	China	landrace	95.3316	29.32698	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L35	Guang8	China	landrace	109.11917	21.4798	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L36	Gouweisu	China	landrace	114.46269	22.79928	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L37	longzhaonuo	China	landrace	109.88886	31.08134	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L38	Nuogu	China	landrace	117.971185	28.44442	FASTA	FASTA	FASTA	FASTA	GFF	TXT
L39	Huangjinmiao	China	landrace	108.410	23.775	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Me34V	Me34V	Canada	wild	56.197	-96.686	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q01	19	China	wild	109.49081	36.596537	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q02	29	China	wild	104.065735	30.659462	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q03	40	China	wild	118.326443	35.065282	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q04	61	China	wild	123.429096	41.796767	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q06	92	China	wild	116.2312	40.22072	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q07	115	China	wild	114.20153	36.69281	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q09	155	China	wild	111.06723	39.02805	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q10	168	China	wild	114.879365	30.447711	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q11	175	China	wild	108.320004	22.82402	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q12	196	China	wild	91.132212	29.660361	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q13	205	China	wild	113.280637	23.125178	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q14	221	China	wild	115.892151	28.676493	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q15	235	China	wild	120.32376	32.85078	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q16	245	China	wild	115.83187	40.91438	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q17	260	China	wild	106.76889	31.85125	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q18	276	China	wild	112.434468	34.663041	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q19	285	China	wild	112.549248	37.857014	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q20	293	China	wild	112.736465	37.696495	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q21	310	China	wild	125.3245	43.886841	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q22	322	China	wild	106.376173	39.01333	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q23	348	China	wild	111.691347	29.040225	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q24	355	China	wild	121.65985	31.81083	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q25	383	China	wild	106.21267	28.31976	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q26	407	Russia	wild	55.754	37.638	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q28	505	France	wild	46.676	2.374	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q29	510	Oklachoma	wild	35.449	-97.533	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q30	W49	Japan	wild	35.907	139.523	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q31	W55	Bristol	wild	43.798	-86.070	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q32	W57	Chile	wild	-26.795	-69.603	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q33	W58	Turkey	wild	39.086	34.531	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q34	W60	Afghanistan	wild	34.524	69.208	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q35	W61	Iran	wild	31.935	54.159	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q36	W63	Russia	wild	55.754	37.638	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Q37	W64	Poland	wild	52.407	19.240	FASTA	FASTA	FASTA	FASTA	GFF	TXT
Yugu18	Yugu18	China	cultivar	114.35005	36.09685	FASTA	FASTA	FASTA	FASTA	GFF	TXT

Other Setaria Genomes

Sample Name	Genome Sequence	CDS Sequence	Protein Sequence	Gene Sequence	GFF3	Annotation	Reference
A10	FASTA	FASTA	FASTA	FASTA	GFF	TXT	Nature Biotechnology (2020)
xiaomi	FASTA	FASTA	FASTA	FASTA	GFF	XLSX	Nature Plants (2020)
Yugu1	FASTA	FASTA	FASTA	FASTA	GFF	TXT	Nature Biotechnology (2012)
Zhanggu	FASTA	FASTA	FASTA	FASTA	GFF	TXT	Nature Biotechnology (2012)